SuperSites Data Portal
Plant Functional Traits, Various Sites, 2010-2014
- Citation
-
Atkin, O (): Plant Functional Traits, Various Sites, 2010-2014. TERN Australian SuperSite Network. http://supersites.tern.org.au/knb/metacat/supersite.949.4/html
- Identifier
-
- docid
- supersite.949.4
- Data Creators
-
- Individual
- Professor Owen Atkin
- Position
- Head, Division of Plant Sciences
- Organization
- Australian National University
- Abstract
-
Key leaf traits describing their structure, chemistry and metabolism. Data include measurements repeated at contrasting seasons between year 2010 and 2014 across seven sites (Alice Mulga, Calperum Mallee, Cumberland Plain, Cape Tribulation, Robson Creek, Great Western Woodland, and Warra). The plants measured were selected to include locally dominant species and to provide a wide range of leaf morphology. Leaf samples and measurements were focused in the main plot around each site's OzFlux tower.
- Contacts for Questions on the Use and Interpretation of Data
-
- Individual
- Professor Owen Atkin
- Position
- Head, Division of Plant Sciences
- Organization
- Australian National University
- Address
-
ARC Centre of Excellence in Plant Energy Biology Division of Plant Sciences
Research School of Biology
Canberra. ACT 2601
Australia
- Phone
-
- voice
- 02 61255046
- Email Address
- owen.atkin@anu.edu.au
- Methods and Sampling Information
-
- Methods
-
Method Step 1
- Description
-
Leaf gas exchange
At each visit, we chose young, fully developed leaves from two sun exposed branches of each selected tree. Leaf gas exchange measurements were concentrated in the morning. Sun exposed branches were excised and the cut end of the branches immediately placed in a bucket and then recut under water to re-establish the xylem water column. For each leaf, approximately light-saturated (1500 µmol photons m-2 s-1) measures of net photosynthesis were taken at ambient CO2 concentration, 400 µmol mol-1 (ppm) (A400) and then at 1500 ppm (A1500). The leaf was next wrapped in aluminium foil for 30 minutes before respiration in darkness (Rdark) was measured, still at 400 ppm CO2. Air flow was held constant and a constant chamber block temperature was adopted, set marginally (ca. 1°C) higher than expected morning air temperatures to counter the effect of transpirational cooling and to ensure leaf and ambient air temperatures were similar.
- Instrument
-
- Portable photosynthesis system (Li-Cor 6400, Li-Cor, Lincoln, NE, USA), using a 6 cm2 chamber fitted with a red-blue light source (Li-Cor 6400-02B LED)
Method Step 2- Description
-
Leaf area and dried mass
On completion of the gas exchange measurements leaves were weighed for fresh mass and scanned for leaf area before being dried in an oven at 70 °C for a minimum of 48 hours, after which their dry mass was recorded.
- Instrument
-
- Document scanner, drying oven and balance
Method Step 3- Description
-
Leaf chemistry
Oven-dried leaf material was used for determination of total leaf nitrogen and phosphorus: dried ground leaf material was hot-digested in acid-peroxide before colorimetric analysis using a flow injection system.
- Instrument
-
- QuikChem 8500, Lachat Instruments, Loveland, Colorado, USA
- Sampling
-
- Study Extent Description
-
Repeat measurements of the same plants at two time points in a year: summer or wet season and winter or dry season. For the Alice Mulga site we have only one visit, in the dry season.
- Sampling Description
-
Trees and shrubs were selected to include common species that provided sufficient replication within the plot (ideally n ≥ 5) and also to provide a range of leaf morphology.
- Keywords and Subject Categories
-
- anzsrc
-
- 0602
- 0606
- 0607
-
- leaf traits
- photosynthesis
- respiration
- nitrogen
- phosphorus
- leaf mass per unit area
- TERN
- Alice Mulga SuperSite
- Calperum Mallee SuperSite
- Cumberland Plain SuperSite
- Far North Queensland Rainforest SuperSite
- Daintree
- Cape Tribulation
- Robson Creek
- Great Western Woodlands SuperSite
- Warra Tall Eucalypt SuperSite
- Geographic Coverage
-
- Geographic Description
- Warra Tall Eucalypt SuperSite
- Bounding Coordinates
-
- West
- 146.65 degrees
- East
- 146.65 degrees
- North
- -43.095 degrees
- South
- -43.095 degrees
- Geographic Description
- Great Western Woodlands SuperSite, Salmon gum, Gimlet plots
- Bounding Coordinates
-
- West
- 120.654 degrees
- East
- 120.654 degrees
- North
- -30.191 degrees
- South
- -30.191 degrees
- Geographic Description
- Far North Queensland Rainforest SuperSite, Daintree Rainforest Observatory, Cape Tribulation
- Bounding Coordinates
-
- West
- 145.447 degrees
- East
- 145.447 degrees
- North
- -16.103 degrees
- South
- -16.103 degrees
- Geographic Description
- Far North Queensland Rainforest SuperSite, Robson Creek, 25 ha Plot
- Bounding Coordinates
-
- West
- 145.63 degrees
- East
- 145.63 degrees
- North
- -17.117 degrees
- South
- -17.117 degrees
- Geographic Description
- Cumberland Plain SuperSite, EucFACE site
- Bounding Coordinates
-
- West
- 150.738 degrees
- East
- 150.738 degrees
- North
- -33.619 degrees
- South
- -33.619 degrees
- Geographic Description
- Calperum Mallee SuperSite, Mallee Plot
- Bounding Coordinates
-
- West
- 140.58 degrees
- East
- 140.58 degrees
- North
- -34.003 degrees
- South
- -34.003 degrees
- Geographic Description
- Alice Mulga SuperSite, Mulga, Woodforde River, Ti Tree sites
- Bounding Coordinates
-
- West
- 133.3276 degrees
- East
- 133.3276 degrees
- North
- -22.3468 degrees
- South
- -22.3468 degrees
- Temporal Coverage
-
- Date
- 2010
- Date Begin
- 2012
- Date End
- 2014
- Intellectual Rights, Licence and Usage Conditions
-
CC-BY-4_0
- Data Table
-
- Name
- leaf_traits_summary_2010_2014.csv
- Description
- Leaf Trait Data, Warra SuperSite, 2013
- Attribute Information
-
Site
- Name
- Site
- Definition
- Study site, location
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- Site
Visit- Name
- Visit
- Definition
- Study period
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- season
Tree.id- Name
- Tree.id
- Definition
- Tree.id uses the first one available from following order: a census inventory number (e.g. Daintree, Robson), GPS coordinates, and Replicate ID.
- Measurement Type
- ordinal
- Measurement Domain
-
- Text Domain
-
- Definition
- Any text or number as identifier
Date- Name
- Date
- Definition
- Measurement date
- Measurement Type
- dateTime
- Measurement Domain
-
- Format
- dd.mm.yy
Replicate- Name
- Replicate
- Definition
- Alpha-numeric code specifying Site-Visit-Tree-Branch
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- tree reference
Branch- Name
- Branch
- Definition
- Typically two branches sampled per plant per visit
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- branch
Species- Name
- Species
- Definition
- Plant species
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- species
Family- Name
- Family
- Definition
- Plant family
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- family
Genus- Name
- Genus
- Definition
- Plant genus
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- genus
PFT- Name
- PFT
- Definition
- Plant Functional Type
- Measurement Type
- nominal
- Measurement Domain
-
- Text Domain
-
- Definition
- types specified in JULES
A400.a- Name
- A400.a
- Definition
- Net photosynthesis at [CO2] 400 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- micromolsPerMetreSquaredPerSecond
- Number Type
- natural
A1500.a- Name
- A1500.a
- Definition
- Net photosynthesis at [CO2] 1500 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- micromolsPerMetreSquaredPerSecond
- Number Type
- natural
Rdark.a- Name
- Rdark.a
- Definition
- CO2 efflux (respiration) in the dark
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- micromolsPerMetreSquaredPerSecond
- Number Type
- natural
E400.a- Name
- E400.a
- Definition
- Transpiration rate at [CO2] 400 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- millimolsPerMetreSquaredPerSecond
- Number Type
- natural
E1500.a- Name
- E1500.a
- Definition
- Transpiration rate at [CO2] 400 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- millimolsPerMetreSquaredPerSecond
- Number Type
- natural
Edark.a- Name
- Edark.a
- Definition
- Transpiration rate in the dark
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- millimolsPerMetreSquaredPerSecond
- Number Type
- natural
T400- Name
- T400
- Definition
- Leaf temperature at [CO2] 400 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- celsius
- Number Type
- natural
T1500- Name
- T1500
- Definition
- Leaf temperature at [CO2] 1500 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- celsius
- Number Type
- natural
Tdark- Name
- Tdark
- Definition
- Leaf temperature in the dark
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- celsius
- Number Type
- natural
VpdL400- Name
- VpdL400
- Definition
- Vapour pressure deficit based on leaf temp.
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- kilopascal
- Number Type
- natural
gs400- Name
- gs400
- Definition
- Stomatal conductance at [CO2] 400 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- molsPerMetreSquaredPerSecond
- Number Type
- natural
gs1500- Name
- gs1500
- Definition
- Stomatal conductance at [CO2] 1500 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- molsPerMetreSquaredPerSecond
- Number Type
- natural
Ci.Ca- Name
- Ci.Ca
- Definition
- Ratio [CO2]internal : [CO2]ambient with [CO2]Ref at 400 ppm
- Measurement Type
- ratio
- Measurement Domain
-
- Custom Unit
- Percentage
- Number Type
- natural
Ci400- Name
- Ci400
- Definition
- Intercellular [CO2] with CO2 Ref at 400 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- Micromols per Mol
- Number Type
- natural
Ci1500- Name
- Ci1500
- Definition
- Intercellular [CO2] with CO2Ref at 1500 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- Micromols per Mol
- Number Type
- natural
Leafarea- Name
- Leafarea
- Definition
- Area of leaf material inside the chamber
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- squareCentimeters
- Number Type
- natural
PAR- Name
- PAR
- Definition
- Light setting inside the chamber
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- micromolsPerMetreSquaredPerSecond
- Number Type
- natural
Press- Name
- Press
- Definition
- Atmospheric pressure
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- kilopascal
- Number Type
- natural
Start- Name
- Start
- Definition
- Time of the first A400 observation
- Measurement Type
- dateTime
- Measurement Domain
-
- Format
- hh:mm:ss
LDMC- Name
- LDMC
- Definition
- Ratio leaf dry to fresh mass
- Measurement Type
- ratio
- Measurement Domain
-
- Standard Unit
- number
- Number Type
- natural
LMA- Name
- LMA
- Definition
- Leaf dried mass per unit area
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- gramsPerSquareMeter
- Number Type
- natural
FMA- Name
- FMA
- Definition
- Leaf fresh mass per unit area
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- gramsPerSquareMeter
- Number Type
- natural
LeafN.m- Name
- LeafN.m
- Definition
- Total leaf nitrogen (N)
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- milligramsPerGram
- Number Type
- natural
LeafP.m- Name
- LeafP.m
- Definition
- Total leaf phosphorus (P)
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- milligramsPerGram
- Number Type
- natural
RatioNP- Name
- RatioNP
- Definition
- Ratio total leaf [N] : [P]
- Measurement Type
- ratio
- Measurement Domain
-
- Standard Unit
- number
- Number Type
- natural
A400.m- Name
- A400.m
- Definition
- Net photosynthesis at [CO2] 400 ppm expressed per unit leaf dried mass basis
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- nanomolesPerGramPerSecond
- Number Type
- natural
A1500.m- Name
- A1500.m
- Definition
- Net photosynthesis at [CO2] 1500 ppm expressed per unit leaf dried basis
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- nanomolesPerGramPerSecond
- Number Type
- natural
Rdark.m- Name
- Rdark.m
- Definition
- CO2 efflux in the dark expressed per unit leaf dried basis
- Measurement Type
- ratio
- Measurement Domain
-
- Standard Unit
- nanomolesPerGramPerSecond
- Number Type
- natural
LeafN.a- Name
- LeafN.a
- Definition
- Total leaf nitrogen expressed per unit leaf area
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- gramsPerSquareMeter
- Number Type
- natural
LeafP.a- Name
- LeafP.a
- Definition
- Total leaf phosphorus expressed per unit leaf area
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- milligramsPerSquareMeter
- Number Type
- natural
A400.N- Name
- A400.N
- Definition
- Net photosynthesis at [CO2] 400 ppm, per unit N
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- micromolesPerGramPerSecond
- Number Type
- natural
A400.P- Name
- A400.P
- Definition
- Net photosynthesis at [CO2] 400 ppm, per unit P
- Measurement Type
- interval
- Measurement Domain
-
- Custom Unit
- micromolesPerGramPerSecond
- Number Type
- natural
wue400- Name
- wue400
- Definition
- Water use efficiency (A/E) at [CO2] 400 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- molarity
- Number Type
- natural
wue1500- Name
- wue1500
- Definition
- Water use efficiency (A/E) at [CO2] 1500 ppm
- Measurement Type
- interval
- Measurement Domain
-
- Standard Unit
- molarity
- Number Type
- natural
- Number Of Records
- 1121
- Physical Structure Description
-
- Object Name
- leaf_traits_summary_2010_2014.csv
- Size
- 340086 byte
- Text Format
-
- Number of Header Lines
- 1
- Record Delimiter
- #x0A
- Attribute Orientation
- column
- Simple Delimited
-
- Field Delimiter
- ,
- Distribution
-
Online
- URL
- supersite.950.2
- Additional Metadata Links
-
unitListAdditional Metadata : unitList
- Metadata
-
- unitList
-
- unit
-
- @id
- micromolsPerMetreSquaredPerSecond
- @multiplierToSI
- 1000/Mw
- @name
- micromolsPerMetreSquaredPerSecond
- @parentSI
- kilogramsPerMeterSquaredPerSecond
- @unitType
- arealMolarFluxDensityRate
unitListAdditional Metadata : unitList- Metadata
-
- unitList
-
- unit
-
- @id
- millimolsPerMetreSquaredPerSecond
- @name
- millimolsPerMetreSquaredPerSecond
- @unitType
- arealMolarFluxDensityRate
unitListAdditional Metadata : unitList- Metadata
-
- unitList
-
- unit
-
- @id
- molsPerMetreSquaredPerSecond
- @name
- molsPerMetreSquaredPerSecond
- @unitType
- arealMolarFluxDensityRate
unitListAdditional Metadata : unitList- Metadata
-
- unitList
-
- unit
-
- @id
- Percentage
- @multiplierToSI
- 0.01
- @name
- Percentage
- @parentSI
- number
- @unitType
- ratios
unitListAdditional Metadata : unitList- Metadata
-
- unitList
-
- unit
-
- @id
- micromoles per mole
- @name
- micromoles per mole
- @parentSI
- gramsPerGram
- @unitType
- massPerMass
unitListAdditional Metadata : unitList- Metadata
-
- unitList
-
- unit
-
- @id
- Micromols per Mol
- @name
- Micromols per Mol
- @parentSI
- gramsPerGram
- @unitType
- massPerMass
unitListAdditional Metadata : unitList- Metadata
-
- unitList
-
- unit
-
- @id
- milligramsPerGram
- @name
- milligramsPerGram
- @parentSI
- gramsPerGram
- @unitType
- massPerMass
unitListAdditional Metadata : unitList- Metadata
-
- unitList
-
- unit
-
- @id
- micromolesPerGramPerSecond
- @name
- micromolesPerGramPerSecond
- @parentSI
- molesPerKilogramPerSecond
- @unitType
- amountOfSubstanceWeightFlux
- Access
-
- Access Control
-
- Auth System
- knb
- Order
- allowFirst
- Allow:
-
Permission Principal [read] public [all] cn=submitters,o=unaffiliated,dc=ecoinformatics,dc=org
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