Soil Biodiversity, Bioplatforms Australia - Calperum Mallee SuperSite, 2013

The Biome of Australian Soil Environments project used amplicon (bacterial 16S, archael 16S, fungal ITS and bacterial 18S) and shotgun metagenomics sequencing approaches to assess soil biodiversity across Australia. SuperSites provided soil samples for sequencing and contextual data.

Sample collection procedure, amplicon methods and OTU pipelines are available at http://www.bioplatforms.com/soil-biodiversity/

Reference: (2016) Bissett, A, Fitzgerald, A, et al. Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database. GigaScience 5:21. doi: 10.1186/s13472-016-0126-5

Soil Microbiome metabarcoding amplicon data and contextual data available from Bioplatforms Australia BASE data portal

Calperum Mallee SuperSite data is available under the BASE codes:

Code Location Depth
102.100.100.12897 Core 1 ha plot 0-10 cm
102.100.100.12898 Core 1 ha plot 20-30 cm
102.100.100.12899 Chowilla Floodplain 0-10 cm
102.100.100.12900 Chowilla Floodplain 20-30 cm
102.100.100.12901 Callitris Woodland 0-10 cm
102.100.100.12902 Callitris Woodland 20-30 cm